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080100 - Disclosure - Organization and Significant Accounting Policies (Tables)
(http://isispharm.com/role/OrganizationAndSignificantAccountingPoliciesTables)
Table(Implied)
Slicers (applies to each fact value in each table cell)
Organization and Significant Accounting Policies [Abstract]Period [Axis]
2016-01-01 - 2016-12-31
Organization and Significant Accounting Policies [Abstract]
 
Amortization Expense for Patents
Based on existing patents, estimated amortization expense related to patents in each of the next five years is as follows:

Years Ending December 31,
 
Amortization
(in millions)
 
2017
 
$
1.4
 
2018
 
$
1.3
 
2019
 
$
1.2
 
2020
 
$
1.1
 
2021
 
$
1.0
 

 
 
Property, Plant and Equipment

We carry our property, plant and equipment at cost and depreciate it on the straight-line method over its estimated useful life, which consists of the following (in thousands):

     
December 31,
 
  
Estimated Useful Lives
(in years)
  
2016
  
2015
 
Computer software, laboratory, manufacturing and other equipment
 
3 to 10
  
$
63,287
  
$
56,822
 
Building and building systems
 
25 to 40
   
48,909
   
48,163
 
Land improvements
  
20
   
2,853
   
2,853
 
Leasehold improvements
 
5 to 20
   
41,736
   
39,061
 
Furniture and fixtures
 
5 to 10
   
5,937
   
5,842
 
       
162,722
   
152,741
 
Less accumulated depreciation
      
(80,075
)
  
(72,706
)
       
82,647
   
80,035
 
Land
      
10,198
   
10,198
 
 Total
     
$
92,845
  
$
90,233
 

 
 
Changes in Accumulated Other Comprehensive Income (Loss)
Accumulated other comprehensive income (loss) is primarily comprised of unrealized gains and losses on investments, net of taxes and adjustments we made to reclassify realized gains and losses on investments from other accumulated comprehensive income to our Consolidated Statement of Operations. The following table summarizes changes in accumulated other comprehensive income for the years ended December 31, 2016, 2015 and 2014 (in thousands):
 
  
Year Ended December 31,
 
  
2016
  
2015
  
2014
 
Beginning balance accumulated other comprehensive (loss) income
 
$
(13,565
)
 
$
39,747
  
$
21,080
 
Unrealized (losses) gains on securities, net of tax (1)
  
(17,219
)
  
(33,101
)
  
40,079
 
Amounts reclassified from accumulated other comprehensive (loss) income (2)
  
447
   
(20,211
)
  
(21,412
)
Currency translation adjustment
  
(21
)
  
   
 
Net other comprehensive (loss) income for the period
  
(16,793
)
  
(53,312
)
  
18,667
 
Ending balance accumulated other comprehensive (loss) income
 
$
(30,358
)
 
$
(13,565
)
 
$
39,747
 

(1)
Other comprehensive income includes income tax expense of $12.8 million for the year ended December 31, 2014. There was no tax expense for other comprehensive income for the years ended December 31, 2016 or 2015.

(2)
Amounts for 2015 are included in the separate line called “Gain on investment in Regulus Therapeutics Inc.” on our Consolidated Statement of Operations. For 2014, $19.9 million is included in a separate line called “Gain on investment in Regulus Therapeutics Inc.”, with the remaining amount included in a separate line called “Gain on investments, net” on our Consolidated Statement of Operations.

 
 
Assets Measured at Fair Value on a Recurring Basis
The following tables present the major security types we held at December 31, 2016 and 2015 that are regularly measured and carried at fair value. The tables segregate each security type by the level within the fair value hierarchy of the valuation techniques we utilized to determine the respective securities’ fair value (in thousands):

  
At
December 31, 2016
  
Quoted Prices in
Active Markets
(Level 1)
  
Significant Other
Observable
Inputs
(Level 2)
 
Cash equivalents (1)
 
$
54,137
  
$
54,137
  
$
 
Corporate debt securities (2)
  
396,221
   
   
396,221
 
Debt securities issued by U.S. government agencies (2)
  
55,179
   
   
55,179
 
Debt securities issued by the U.S. Treasury (2)
  
29,286
   
29,286
   
 
Debt securities issued by states of the U.S. and political subdivisions of the states (3)
  
109,111
   
   
109,111
 
Investment in Regulus Therapeutics Inc.
  
2,414
   
2,414
   
 
Total
 
$
646,348
  
$
85,837
  
$
560,511
 

  
At
December 31, 2015
  
Quoted Prices in
Active Markets
(Level 1)
  
Significant Other
Observable
Inputs
(Level 2)
 
Cash equivalents (1)
 
$
88,902
  
$
88,902
  
$
 
Corporate debt securities (2)
  
438,426
   
   
438,426
 
Debt securities issued by U.S. government agencies (2)
  
89,253
   
   
89,253
 
Debt securities issued by the U.S. Treasury (2)
  
2,601
   
2,601
   
 
Debt securities issued by states of the U.S. and political subdivisions of the states (4)
  
127,656
   
   
127,656
 
Investment in Regulus Therapeutics Inc.
  
24,792
   
24,792
   
 
Total
 
$
771,630
  
$
116,295
  
$
655,335
 


(1)
Included in cash and cash equivalents on our consolidated balance sheet.

(2)
Included in short-term investments on our consolidated balance sheet.

(3) $9.3 million included in cash and cash equivalents on our consolidated balance sheet, with the difference included in short-term investments on our consolidated balance sheet.

(4) $7.5 million included in cash and cash equivalents on our consolidated balance sheet, with the difference included in short-term investments on our consolidated balance sheet.
 
 
Reconciliation of Assets Measured at Fair Value on a Recurring Basis Using Significant Unobservable Inputs (Level 3)
The following is a summary of our investments measured at fair value on a recurring basis using significant unobservable inputs (Level 3) for the year ended December 31, 2015 (in thousands):

  
Year Ended
December 31,
 
  
2015
 
Beginning balance of Level 3 investments
 
$
81,881
 
Transfers into Level 3 investments
  
 
Total gains (losses) included in accumulated other comprehensive income (loss)
  
22,377
 
Transfers out of Level 3 investments
  
(104,258
)
Ending balance of Level 3 investments
 
$