Entity information:
1
3
. Income Taxes
 
We account for income taxes using the liability method in accordance with ASC
740
(Topic
740,
Income Taxes
). Deferred income taxes reflect the net tax effects of temporary differences between the carrying amounts of assets and liabilities for financial reporting purposes and the amounts used for income tax purposes.
 
On
December 22, 2017,
the U.S. government enacted comprehensive tax legislation
, commonly referred to as the Tax Cuts and Jobs Act (“Tax Act”). The Tax Act makes broad and complex changes to the U.S. tax code, including, but
not
limited to, (
1
) reducing the U.S. federal corporate tax rate from
35%
to
21%
;
(
2
) requiring companies to pay a
one
-time transition tax on certain unrepatriated earnings of foreign subsidiaries; (
3
) generally eliminating U.S. federal income taxes on dividends from foreign subsidiaries; (
4
) requiring a current inclusion in U.S. federal taxable income of certain earnings of controlled foreign corporations; (
5
) eliminating the corporate AMT and changing how existing AMT credits can be realized; (
6
) creating the base erosion anti-abuse tax (“BEAT”), a new minimum tax; (
7
) creating a new limitation on deductible interest expense; and (
8
) changing rules related to uses and limitations of net operating loss carryforwards created in tax years beginning after
December 31, 2017.
 
In
201
7,
we recorded an income tax benefit of approximately
$11.7
million, of which
$6.6
million related to the reduction in the federal and state tax rates,
$4.8
million related to the use of our naked credit as a source of income to release a portion of our valuation allowance and the remaining
$0.2
million related to a refundable AMT credit. Our effective tax rate for
2017
was
18.6%.
In
2016,
we recorded an income tax expense of approximately
$1.8
million as a result of an increase in our effective tax rate to
14.7%.
Our effective tax rate in
2016
was impacted by our relocation to New York City, which has its own local tax rate and adds to the overall tax rate used for calculating the income tax provision. In
2015,
we recorded an income tax benefit of approximately
$133
thousand as a result of the change in the temporary difference between carrying amounts of in process research and development assets for financial reporting purposes and the amounts used for income tax purposes. Our effective tax rate for
2015
was
0.3%.
 
We have completed calculations through
June 30, 2016,
under Internal Revenue Code Section
382,
the results of which indicate that past ownership changes will limit annual utilization of net operating losses (“NOLs”) in the future. Ownership changes subsequent to
June 30, 2016,
may
further limit the future utilization of net operating loss and tax credit carry-forwards as defined by the federal and state tax codes.
 
Our accounting for the following elements of the Tax Act is
not
yet complete as we are still in the process of analyzing its impact on us. Where we have been able to make reasonable estimates of the effects for which our analysis is
not
yet complete,
we have recorded provisional amounts pursuant to the guidance within SEC Staff Accounting Bulletin
No.
118
(“SAB
118”
). Our accounting treatment is expected to be complete when our
2017
U.S. corporate income tax return is filed in
2018
.
 
Reduction of U.S. federal corporate tax rate
: The Tax Act reduces the corporate tax rate to
21%,
effective
January 1, 2018.
Consequently, we have adjusted our deferred tax asset, liability and corresponding valuation allowance based on the enacted tax rate, which resulted in a provisional income tax benefit of approximately
$3.7
million in
2017.
 
Deemed Repatriation Transition Tax
: The Deemed Repatriation Transition Tax (“Transition Tax”) is a tax on previously untaxed accumulated and current earnings and profits (“E&P”) of certain of our foreign subsidiaries. To determine the amount of the Transition Tax, we must determine, in addition to other factors, the amount of post-
1986
E&P of the relevant subsidiaries, as well as the amount of non-U.S. income taxes paid on such earnings.
 
The components of the (benefit from) provision for income taxes during
each of the
three
years ending
December 31, 2017
consisted of the following:
 
   
2017
   
2016
   
2015
 
Current taxes:
                       
United States
  $
3
    $
11
    $
-
 
Foreign
   
-
     
-
     
-
 
State
   
(16
)    
22
     
-
 
Total current taxes
 
$
(13
)
 
$
33
   
$
-
 
                         
Deferred taxes:
                       
United States
  $
(8,777
)   $
-
    $
-
 
Foreign
   
-
     
-
     
-
 
State
   
(2,882
)    
1,811
     
(133
)
Total deferred taxes
 
$
(11,659
)
 
$
1,811
   
$
(133
)
                         
(Benefit from) provision for income taxes
 
$
(11,672
)
 
$
1,844
   
$
(133
)
 
Deferred tax assets
and liabilities as of
December 31, 2017
and
2016
consisted of the following:
 
   
2017
   
2016
 
Deferred tax assets:
               
Depreciation and amortization
  $
100
    $
788
 
Research & Experimental and Orphan Drug tax credit carry-forwards
   
33,496
     
27,361
 
NYS investment tax credit carry-forwards
   
1,284
     
933
 
AMT credit carry-forwards
   
-
     
221
 
Net operation loss carry-forwards
   
177,313
     
227,171
 
Capitalized research and development expenditures
   
3,066
     
11,915
 
Stock compensation
   
5,666
     
12,343
 
Other items
   
1,279
     
4,513
 
Total gross deferred tax assets
   
222,204
     
285,245
 
Less valuation allowance
   
(217,382
)    
(285,245
)
Deferred tax assets
   
4,822
     
-
 
Deferred tax liability
   
(6,397
)    
(13,010
)
Net deferred tax liability
 
$
(1,575
)
 
$
(13,010
)
 
We
maintain a tax valuation allowance on substantially all deferred tax assets considering our history of taxable losses and the uncertainty regarding our ability to generate sufficient taxable income in the future to utilize these deferred tax assets. For
2017
and
2016,
we incurred net losses for tax purposes. We recognized a tax valuation against deferred tax assets at
December 31, 2017
and
2016.
In
2017
and
2016,
we recognized deferred tax liabilities of
$1.6
million and
$13.0
million, respectively, to reflect the net tax effects of temporary differences between the carrying amounts of in process research and development assets for financial reporting purposes and the amounts used for income tax purposes.
 
The following is a reconciliation of
the U.S. statutory income tax rate to our effective tax rate for the years ended
December 31, 2017,
2016,
and
2015:
 
   
2017
   
2016
   
2015
 
U.S. Federal statutory rate
   
34.0
%    
34.0
%    
34.0
%
State income taxes, net of Federal benefit
   
1.5
%    
10.8
%    
4.8
%
Foreign rate differential
   
(0.6%
)    
2.6
%    
(0.1%
)
Research and experimental and Orphan Drug tax credit
   
9.4
%    
(63.0%
)    
1.7
%
Effect of federal and state tax rate changes
   
(6.1%
)    
(43.0%
)    
(4.8%
)
Tax reform impact    
13.9
%    
-
     
-
 
Permanent differences
   
(4.4%
)    
0.1
%    
(1.4%
)
Stock option shortfalls
   
(3.1%
)    
22.3
%    
(6.1%
)
Change in valuation allowance
   
(26.0%
)    
50.9
%    
(27.8%
)
Effective tax rate
   
18.6
%
   
14.7
%
   
0.3
%
 
As of
December 31,
201
7,
we had available, for tax return purposes, unused federal NOLs of approximately
$664.8
million, which will expire in various years from
2018
to
2037.
Also, we had available, for tax return purposes, unused state NOLs of approximately
$569.0
million, which will expire in various years from
2030
to
2037.
 
We have reviewed our nexus in various tax jurisdictions and our tax positions related to all open tax years for events that could change the status of our
tax liability under ASC
740,
if any, or require an additional liability to be recorded. We have
not,
as of yet, conducted a study of our research and experimental (“R&E”) credit carry-forwards. Such a study might result in an adjustment to our R&E credit carry-forwards, but until a study is completed and any adjustment is known,
no
amounts are being presented as an uncertain tax position under ASC 
740
-
10
except for uncertain tax positions acquired in connection with the Molecular Insight acquisition. A full valuation allowance has been provided against our R&E credits and, if an adjustment is required, this adjustment would be offset by an adjustment to the valuation allowance. Thus, there would be
no
impact to the statements of operations and comprehensive loss if an adjustment was required.
 
As of
December 31,
2017,
we are subject to federal, foreign, and state income tax. Open tax years relate to years in which unused net operating losses were generated or, if used, for which the statute of limitation for examination by taxing authorities has
not
expired. Our open tax years extend back to
1997.
No
amounts of interest or penalties were recognized in our consolidated statements of operations or consolidated balance sheets as of and for the years ended
December 31, 2017,
2016,
and
2015.
 
Our R&E
and Orphan Drug tax credit carry-forwards of approximately
$34.2
million at
December 31, 2017
expire in various years from
2018
to
2037.
 
As of
December 31, 2017,
and
2016,
we have
not
recognized any liability for uncertain tax positions, because of our full valuation allowance on net operating losses and R&E credits. We will recognize interest and penalties related to these positions, should such costs be assessed. The recognition of unrecognized tax benefits would
not
affect our effective tax rate because the tax benefit would be offset by an increase in our valuation allowance.
 
The following is a tabular reconciliation of the total amounts of unrecognized tax benefits for the years ended
December 31,
201
7
and
2016.
 
   
2017
   
2016
 
Beginning uncertain tax benefits
  $
2,661
    $
2,661
 
Prior year - increases (decreases)
   
(710
)    
-
 
Current year - increases (decreases)
   
-
     
-
 
Settlements
   
-
     
-
 
Expired statuses
   
-
     
-
 
Ending uncertain tax benefits
 
$
1,951
   
$
2,661